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See all posts21/02/2023 - Open Datasets
ChromDesign Open Datasets
Open science is a key principle of the Innovative Training Network (ITN) ChromDesign, which aims to advance our understanding of chromatin biology and epigenetic regulation. As part of this commitment to openness and transparency, the ChromDesign network has produced a collection of high-quality datasets that are freely available to the scientific community. These datasets represent a valuable resource for researchers working in the field of chromatin biology and are a reflection of the network’s dedication to promoting collaboration, sharing knowledge, and advancing scientific discovery. The collection of datasets will be continually updated to ensure that the latest research findings are made available to the scientific community, further promoting open science principles.
DOI /GEO Accession | GSE151837 | GSE160974 | GSE160975 | GSE197238 | https://zenodo.org/record/6627715 |
Title/Identifier | PML-RARa induces dynamic changes in genome architecture during leukemic transformation | Genome-wide maps of histone PTMs and co-factors in pluripotent mouse embryonic stem cells (mESCs) and epiblast-like cells (EpiLCs) | Total RNA-Seq on control, Polycomb null and H3K27R mutant mESCs and EpiLCs | Cohesin and CTCF control chromosomal contact dynamics in living cells Sequencing data | Cohesin and CTCF control chromosomal contact dynamics in living cells Imaging Data |
Is the dataset accessible? | Yes | Yes | Yes | Yes | Yes |
Is the dataset reusable? | Yes | Yes | Yes | Yes | Yes |
DOI Linked publication | 10.1101/gad.349115.121 | 10.1038/s41588-022-01091-2 | 10.1038/s41588-022-01091-2 | 10.1038/s41588-022-01232-7 | 10.1038/s41588-022-01232-7 |
Contributor partner | CRG | UCPH-BRIC | UCPH-BRIC | FMI | FMI |