21/02/2023 - Open Datasets

ChromDesign Open Datasets

Open science is a key principle of the Innovative Training Network (ITN) ChromDesign, which aims to advance our understanding of chromatin biology and epigenetic regulation. As part of this commitment to openness and transparency, the ChromDesign network has produced a collection of high-quality datasets that are freely available to the scientific community. These datasets represent a valuable resource for researchers working in the field of chromatin biology and are a reflection of the network’s dedication to promoting collaboration, sharing knowledge, and advancing scientific discovery. The collection of datasets will be continually updated to ensure that the latest research findings are made available to the scientific community, further promoting open science principles.

DOI /GEO AccessionGSE151837GSE160974GSE160975GSE197238https://zenodo.org/record/6627715
Title/IdentifierPML-RARa induces dynamic changes in genome architecture during leukemic transformationGenome-wide maps of histone PTMs and co-factors in pluripotent mouse embryonic stem cells (mESCs) and epiblast-like cells (EpiLCs)Total RNA-Seq on control, Polycomb null and H3K27R mutant mESCs and EpiLCsCohesin and CTCF control chromosomal contact dynamics in living cells
Sequencing data
Cohesin and CTCF control chromosomal contact dynamics in living cells
Imaging Data
Is the dataset accessible?YesYesYesYesYes
Is the dataset reusable?YesYesYesYesYes
DOI Linked publication10.1101/gad.349115.12110.1038/s41588-022-01091-210.1038/s41588-022-01091-210.1038/s41588-022-01232-710.1038/s41588-022-01232-7
Contributor partnerCRGUCPH-BRICUCPH-BRICFMIFMI

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